Code repository
https://github.com/GiocomoLab
Data associated with published papers
Hippocampal place code plsticity in CA1 requires postsynaptic fusion. Plitt, Kaganovsky, Say, Sosa, Sudhof, Giocomo, Neuron, 2026
Histology and freely moving behavior data and code are available on Figshare. See the key resources table for doi for each item
Two-photon calcium imaging and virtual reality behavior data can be accessed on the DANDI archive (dandiarchive.org/dandiset/001710).
Custom calcium imaging and behavior analysis scripts are available at https://github.com/GiocomoLab/Plitt_Kaganovsky_Stx3_CA1 (static code at time of submission: 10.5281/zenodo.18625744).
Custom VR and hardware control software is available at https://github.com/GiocomoLab/Unity2020_MorphEnvironments.
Histology and freely moving behavior data and code are available on Figshare. See the key resources table for doi for each item
Two-photon calcium imaging and virtual reality behavior data can be accessed on the DANDI archive (dandiarchive.org/dandiset/001710).
Custom calcium imaging and behavior analysis scripts are available at https://github.com/GiocomoLab/Plitt_Kaganovsky_Stx3_CA1 (static code at time of submission: 10.5281/zenodo.18625744).
Custom VR and hardware control software is available at https://github.com/GiocomoLab/Unity2020_MorphEnvironments.
Entorhinal cortex represents task-relevant remote locations independently of CA1. Aery Jones, Low, Cho, Giocomo, Nature Neuroscience, 2026
https://dandiarchive.org/dandiset/001701/0.260120.0303
https://dandiarchive.org/dandiset/001701/0.260120.0303
Spatial coding dysfunction and network instability in the aging medial entorhinal cortex. Herber, Pratt, Shea, Villeda, Giocomo, Nature Communications, 2025
https://datadryad.org/dataset/doi:10.5061/dryad.8cz8w9h0d
Transcriptomic bulk and single nucleus RNA sequencing data from this study are separately available via the NCBI GEO database (Dataset 1 [Fig. 7 and Supplementary Fig. 7]: Accession Number: GSE263347; Dataset 2 [Supplementary Fig. 8]: Accession Number: GSE281777)
https://datadryad.org/dataset/doi:10.5061/dryad.8cz8w9h0d
Transcriptomic bulk and single nucleus RNA sequencing data from this study are separately available via the NCBI GEO database (Dataset 1 [Fig. 7 and Supplementary Fig. 7]: Accession Number: GSE263347; Dataset 2 [Supplementary Fig. 8]: Accession Number: GSE281777)
A flexible hippocampal population code for experience relative to reward. Sosa, Plitt, Giocomo, Nature Neurosience, 2025
https://doi.org/10.48324/dandi.001361/0.250406.0045
https://doi.org/10.25452/figshare.plus.27098065
https://doi.org/10.25452/figshare.plus.27138633
https://doi.org/10.48324/dandi.001361/0.250406.0045
https://doi.org/10.25452/figshare.plus.27098065
https://doi.org/10.25452/figshare.plus.27138633
One-shot entorhinal maps enable flexible navigation in novel environments. Wen JH*, Sorscher B*, et al., Nature, 2024
https://data.mendeley.com/datasets/rgtk6jygjc/1
https://data.mendeley.com/datasets/2n4t9bw3xz/1
https://data.mendeley.com/datasets/rgtk6jygjc/1
https://data.mendeley.com/datasets/2n4t9bw3xz/1
Subicular neurons encode concave and convex geometries. Sun et al., Nature, 2024
https://data.mendeley.com/datasets/5sj8d5vtg2/1
https://data.mendeley.com/datasets/5sj8d5vtg2/1
Parahippocampal neurons encode task-relevant information for goal-directed navigation. Gonzalez, Giocomo, eLife, 2024
Code at https://github.com/alexgonzl/TMA, (copy archived at Gonzalez, 2023). Data available via links in the Github repository.
Code at https://github.com/alexgonzl/TMA, (copy archived at Gonzalez, 2023). Data available via links in the Github repository.
Ketamine evoked disruption of entorhinal and hippocampal spatial maps. Masuda et al., Nature Communications, 2023
https://figshare.com/articles/dataset/Ketamine_evoked_disruption_of_entorhinal_and_hippocampal_spatial_maps/22696309
https://figshare.com/articles/dataset/Ketamine_evoked_disruption_of_entorhinal_and_hippocampal_spatial_maps/22696309
Neural circuit dynamics of drug-context associative learning in the mouse hippocampus. Sun, Giocomo, Nature Communications, 2022
https://www.doi.org/10.25452/figshare.plus.15041316
https://www.doi.org/10.25452/figshare.plus.15026043
https://www.doi.org/10.25452/figshare.plus.15050289
https://www.doi.org/10.25452/figshare.plus.15041316
https://www.doi.org/10.25452/figshare.plus.15026043
https://www.doi.org/10.25452/figshare.plus.15050289
Distance-tuned neurons drive specialized path integration calculations in medial entorhinal cortex. Campbell, Attinger, et al., Cell Reports, 2021
https://data.mendeley.com/datasets/p8gh7wk9z3/1
https://data.mendeley.com/datasets/p8gh7wk9z3/1
Dynamic and reversible remapping of network representations in an unchanging environment. Low, et al., Neuron, 2021
https://data.mendeley.com/datasets/hntn6m2pgk/1
https://data.mendeley.com/datasets/hntn6m2pgk/1
Experience dependent contextual codes in the hippocampus. Plitt, Giocomo, Nature Neuroscience, 2021
https://dandiarchive.org/dandiset/000054/draft
https://dandiarchive.org/dandiset/000054/draft
Mouse entorhinal cortex encodes a diverse repertoire of self-motion signals. Mallory, Hardcastle et al., Nature Communications, 2020
http://figshare.com/authors/Lisa_Giocomo/9864194
http://figshare.com/authors/Lisa_Giocomo/9864194
Remembered reward locations restructure entorhinal maps. Butler, Hardcastle, Giocomo, Science, 2019
| butler_hardcastle_giocomo_data.zip |
Protocols and methods |
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Protocols to chronically, recoverably implant 1 Neuropixels 1.0 and 2 Neurpixels 2.0 probes into mice and record during a freely moving task
-Emily Jones |