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Preprints
Entorhinal cortex represents task-relevant remote locations independent of CA1
Aery Jones EA, Low IIC, Cho RS, Giocomo LM
bioRxiv. 2024.07.23.604815

Spatial coding dysfunction and network instability in the aging medial entorhinal cortex
Herber CS, Pratt KJB*, Shea JM*, Villeda SA, Giocomo LM
bioRxiv. 2024.04.12.588890

Hippocampal sequences span experience relative to rewards
Sosa M, Plitt MH, Giocomo LM
bioRxiv. 2023;doi.org/12.27.573490

Hippocampal place code plasticity in CA1 requires postsynaptic membrane fusion
Plitt MH*, Kaganovsky K*, Südhof TC, Giocomo LM
bioRxiv. 2023;doi.org/10.1101.2023.11.20.567978


Flexible analysis of animal behavior via time-resolved manifold embedding
York RA, Giocomo LM, Clandinin TR
bioRxiv. 2020;doi.org/10.1101.2020.09.30.321406


2024
One-shot entorhinal maps enable flexible navigation in novel environments
Wen JH*, Sorscher B*, Ganguli S, Giocomo LM
bioRvix. 2023;doi.org/10.1101/2023.09.07.556744
In Press


Parahippocampal neurons encode task-relevant information for goal-directed navigation

Gonzalez A, Giocomo LM

bioRxiv. 2022;doi.org/10.1101/2022.12.15.520660
eLife. 2024 Feb 16:12:RP85646

​
Subicular neurons encode concave and convex geometries
Sun Y, Nita DA, Xiangmin X, Giocomo LM

bioRvix. 2023;doi.org/10.1101/2023.05.07.539721
Nature. 2024

NeuroRoots, a bio-inspired, seamless brain machine interface for long-term recording in delicate brain regions
Ferro MC, Proctor CM, Gonzalez A, Jayabal S, Zhao E, Gagnon M, Slezia A, Pas J, Dijk G, Donahue MJ,
Williamson A, Raymond J, Malliaras GG, Giocomo LM, Melosh NA
bioRxiv. 2018;doi.org/10.1101/460949
AIP Adv. 2024;1(8):085106


2023
Ketamine evoked disruption to entorhinal and hippocampal spatial maps
Masuda FK,
Aery Jones EA, Sun Y, Giocomo LM
bioRvix. 2023;doi.org/10.1101/2023.02.05.527227
Nature Communications. 2023;14(1):6285

Remapping in a recurrent neural network model of navigation and context inference
Low IIC, Giocomo LM, Williams AH
bioRxiv. 2023;doi.org/10.1101/2023.01.25.525596
Elife. 2023;12:RP86943

Neural ensembles in navigation: From single cells to population codes
Aery Jones EA, Giocomo LM
Current Opinion in Neurobiology. 2023;78:102665


All-optical physiology resolves a synaptic basis for behavioral timescale plasticity
Fan LZ, Kim DK, Jennings JH, Tian H, Wang PY, Ramakrishnan C, Randies W, Sun Y, Thadhani E,
​Kim YS, Quirin S, Giocomo LM, Cohen AE, Deisseroth K

Cell. 2023;doi.org/20.2016/j.cell.2022.12.035


A positively tuned voltage indicator reveals electrical correlates of calcium activity in the brain
Evens SW, Shi D, Chavarha M, Plitt MH, Taxidis J, Madruga B, Fan JL, Hwang FJ, Van Keulen SC,
Suomivuori CM, Pang MM, Su S, Zhang G, Lee S, Jiang D, Pradhan L, Lui Y, Reese A, Negrean A, 
Losonczy A, Makinson CD, Wang S, Clandinin T, Dror RO, Ding JB, Golshani P, Giocomo LM, Bi G-Q, Lin MZ

bioRxiv. 2021;doi.org/10.1101/2021,10.21.465345
Nature Methods. 2023;20:1104-1113


2022
Neural circuit dynamics of drug-context associative learning in the mouse hippocampus
Sun Y, Giocomo LM

bioRxiv. 2021;doi.org/10.1101/2021.09.02.45879
Nature Communications. 2022;13(1):6721

A unified theory for the computational and mechanistic origins of grid cells
Sorscher B, Mel GC, Ocko SA, Giocomo LM, Ganguli S
bioRxiv. 2020;doi.org/10.1101/2020.12.29.424583
Neuron. 2022;111(1):121-137.e13


From rats to humans: how novel behavioral paradigms and reinforcement learning can bridge the gap in translation
Gonzalez A, Giocomo LM
Lab Animal. 2022;doi.org/10.1038/s41684-022-01077-x


Task engagement turns on spatial maps
Low IIC, Giocomo LM
Nature Neuroscience. 2022;25(5):534-535


2021
​Distance-tuned neurons drive specialized path integration calculations in medial entorhinal cortex
Campbell MG*, Attinger A*, Ocko SA, Ganguli S, Giocomo LM
biorxiv. 2020;doi.org/10.1101.2020.10.05.327106
Cell Reports. 2021;36(10):109669


Dynamic and reversible remapping of network representations in an unchanging environment
Low IIC, Williams AH, Campbell MG, Linderman SW, Giocomo LM
biorxiv. doi.org/10.1101.2020.10.05.326942
Neuron. 2021;110(5):903


​Experience-dependent contextual codes in the hippocampus
Plitt MH, Giocomo LM
biorxiv. doi.org/10.1101/864090
Nature Neuroscience. 2021;24(5):705-714


Mouse entorhinal cortex encodes a diverse repertoire of self-motion signals
Mallory CS*, Hardcastle K*, Campbell MG, Attinger A, Low IIC, Raymond JL**, Giocomo LM**
Nature Communications. 2021;12:671


Explaining heterogeneity in medial entorhinal cortex with task-driven neural networks
Nayebi A, Attinger A, Campbell MG, Hardcastle K, Low IIC, Mallory CS, Mel GC, Sorscher B, Williams AF, Ganguli S, Giocomo LM, Yamins DLK

biorxiv. 2021;doi.org/10.1101/2021.10.30.466617
NeurIPS 2021
​
Fifty years of the brain's sense of space

Low IIC, Giocomo LM
Nature. 2021;doi 10.1038/d41586-021-03010-7


The grid code for ordered experience
Rueckemann JW*, Sosa M*, Giocomo LM**, Buffalo EA**
Nature Reviews Neuroscience. 2021;doi:10.1038/s41583-021-00499-9


Navigating for reward
Sosa M, Giocomo LM

Nature Reviews Neuroscience. 2021;doi:10.1037/s41583-021-00479-z

Spatial memory: Place cell activity is causally related to behavior
Plitt MH, Giocomo LM
Current Biology. 2021;31:R335-R337
​

2020
Topography in the bursting dynamics of entorhinal neurons
Bant JS, Hardcastle K, Ocko SA, Giocomo LM
Cell Reports. 2020;20:2349-2359


Entorhinal velocity signals reflect environmental geometry
Munn RGK, Mallory CS, Hardcastle K, Chetkovich DM, Giocomo LM
biorxiv. doi.org/10.1101/671222
Nature Neuroscience. 2020;23:239-251


Estimating fluctuations in neural representations of uncertain environments
Farhoodi S, Plitt MH, Giocomo LM, Eden UT

NeurIPS 2020

Multiple head direction signals within entorhinal cortex: origin and function
Munn RGK, Giocomo LM
Current Opinion in Neurobiology. 2020;64:32-40


2019
Remembered reward locations restructure entorhinal spatial maps
Butler WN*, Hardcastle K*, Giocomo LM

Science. 2019;363:1447-1452

How a fly's neural compass adapts to an ever-changing world
Campbell MG, Giocomo LM
Nature. 2019;576:42-43


The shifting sands of cortical divisions
Hardcastle K, Giocomo LM

Neuron. 2019;102:8-11

2018
Principles governing the integration of landmark and self-motion cues in entorhinal cortical codes for navigation
Campbell MG, Ocko SA, Mallory CS, Low IC, Ganguli S, Giocomo LM
Nature Neuroscience. 2018;21:1096-1106

​
Grid scale drives the scale and long-term stability of place maps

Mallory CS, Hardcastle K, Bant JS, Giocomo LM
Nature Neuroscience. 2018;21:270-282


Emergent elasticity in the neural code for space
Ocko SA, Hardcastle K, Giocomo LM, Ganguli S
PNAS. 2018;E11798-E11806


Self-motion processing in visual and entorhinal cortices: Inputs, integration, and implications for position coding
Campbell MG, Giocomo LM
Journal of Neurophysiology. 2018;
120: 2091-2106

Spatial cognition: From entorhinal neural codes to navigation
Mallory CS, Giocomo LM
Nature Neuroscience. 2018;21:7-8


Heterogeneity in hippocampal place coding
Mallory CS, Giocomo LM
Current Opinion in Neurobiology. 2018;49:158-167


2017
​A multiplexed, heterogeneous, and adaptive code for navigation in medial entorhinal cortex
Hardcastle K, Maheswaranathan N, Ganguli S, Giocomo LM
Neuron. 2017;94:375-387


​Cell types for our sense of location: where we are and where we are going
Hardcastle K, Ganguli S, Giocomo LM
Nature Neuroscience. 2017;20:1474-1482

​
2015
Environmental boundaries as an error correction mechanism for grid cells
Hardcastle K, Ganguli S, Giocomo LM
Neuron. 2015;86:827–839

Environmental boundaries as a mechanism for correcting and anchoring spatial maps
Giocomo LM
Journal of Physiology. 2016;594:6501-6511

An internal compass puts flies in their place
Clandinin TR, Giocomo LM
Nature. 2015;521:165-166

Spatial Representation: Maps of fragmented space
Giocomo LM
Current Biology. 2015;25:R362–R363

Computational diversity in the hippocampus: a matter of components
Giocomo LM
Journal of Physiology. 2015;593:1525-1526

Imagine a journey through time and space
Giocomo LM 
Nature Neuroscience. 2015;18:163-164.


2014
Large scale in vivo recordings to study neuronal biophysics
Giocomo LM 
Curr Opin Neurobiol. 2014;32C:1-7.

HCN1 independent grid cell phase precession in mice
Eggink H, Mertens P, Storm E, Giocomo LM 
Hippocampus. 2014;24(3):249-256.

Topography of head direction cells in medial entorhinal cortex
Giocomo LM, Stensola T, Bonnevie T, Van Cauter T, Moser MB, Moser EI
Current Biology. 2014;24(3):252-62.


2012
The neural encoding of space in parahippocampal cortices. 
Giocomo LM, Roudi Y 
Front Neural Circuits. 2012;6:53.  

Phase precession and variable spatial scaling in a periodic attractor map model of medial entorhinal grid cells with realistic after-spike dynamics
Navratilova Z, Giocomo LM, Fellous JM, Hasselmo ME, McNaughton BL 
Hippocampus. 2012;22(4):772-89.  


2011
Computational models of grid cells
Giocomo LM, Moser MB, Moser EI 
Neuron. 2011;71(4):589-603.  

Grid cells use HCN1 channels for spatial scaling
Giocomo LM, Hussaini SA, Zheng F, Kandel ER, Moser MB, Moser EI 
Cell. 2011;147(5):1159-70.  

Spatial representation: maps in a temporal void 
Giocomo LM, Moser EI 
Curr Biol. 2011;21(23):R962-4.  

Frequency of subthreshold oscillations at different membrane potential voltages in neurons at different anatomical positions on the dorsoventral axis in the rat medial entorhinal cortex
Yoshida M, Giocomo LM, Boardman I, Hasselmo ME 
J Neurosci. 2011;31(35):12683-94.  


2010
Cellular dynamical mechanisms for encoding the time and place of events along spatiotemporal trajectories in episodic memory 
Hasselmo ME, Giocomo LM, Brandon MP, Yoshida M 
Behav Brain Res. 2010;215(2):261-74.  

Cholinergic modulation of the resonance properties of stellate cells in layer II of medial entorhinal cortex 
Heys JG, Giocomo LM, Hasselmo ME 
J Neurophysiol. 2010;104(1):258-70. 


2009
Knock-out of HCN1 subunit flattens dorsal-ventral frequency gradient of medial entorhinal neurons in adult mice
Giocomo LM, Hasselmo ME
J Neurosci. 2009;29:7625-30.  

A phase code for memory could arise from circuit mechanisms in entorhinal cortex
Hasselmo ME, Brandon MP, Yoshida M, Giocomo LM, Heys JG, Fransen E, Newman EL, Zilli EA 
Neural Netw. 2009;22(8):1129-38.  

Evaluation of the oscillatory interference model of grid cell firing through analysis and measured period variance of some biological oscillators
Zilli EA, Yoshida M, Tahvildari B, Giocomo LM, Hasselmo ME 
PLoS Comput Biol. 2009;5(11):e1000573.  


2008
Computation by oscillations: implications of experimental data for theoretical models of grid cells
Giocomo LM, Hasselmo ME 
Hippocampus. 2008;18(12):1186-99.  

Time constants of h current in layer ii stellate cells differ along the dorsal to ventral axis of medial entorhinal cortex
Giocomo LM, Hasselmo ME 
J Neurosci. 2008;28(38):9414-25.  


2007
Temporal frequency of subthreshold oscillations scales with entorhinal grid cell field spacing
Giocomo LM, Zilli EA, Frans_n E, Hasselmo ME 
Science. 2007;315(5819):1719-22.  

Grid cell firing may arise from interference of theta frequency membrane potential oscillations in single neurons 
Hasselmo ME, Giocomo LM, Zilli EA 
Hippocampus. 2007;17(12):1252-71.  

Neuromodulation by glutamate and acetylcholine can change circuit dynamics by regulating the relative influence of afferent input and excitatory feedback 
Giocomo LM, Hasselmo ME 
Mol Neurobiol. 2007;36(2):184-200.  


2006
Difference in time course of modulation of synaptic transmission by group II versus group III metabotropic glutamate receptors in region 
CA1 of the hippocampus 
Giocomo LM, Hasselmo ME 
Hippocampus. 2006;16(11):1004-16. 

Cholinergic modulation of cortical function. 
Hasselmo ME, Giocomo LM 
J Mol Neurosci. 2006;30(1-2):133-5.  

Muscarinic suppression in stratum radiatum of CA1 shows dependence on presynaptic M1 receptors and is not dependent on effects at GABA(B) receptors
Kremin T, Gerber D, Giocomo LM, Huang SY, Tonegawa S, Hasselmo ME  
Neurobiol Learn Mem. 2006;85(2):153-63.      


2005
pubmed.ncbi.nlm.nih.gov/33753945/Nicotinic modulation of glutamatergic synaptic transmission in region CA3 of the hippocampus
Giocomo LM, Hasselmo ME 
Eur J Neurosci. 2005;22(6):1349-56.  


 Giocomo Lab   |  Stanford University School of Medicine  |  Department of Neurobiology   |  Wu Tsai Neurosciences Institute  |  Stanford, CA 94305